[PDF] Characterization Of Non Covalent Complexes By Electrospray Ionization Esi Fourier Transform Mass Spectrometry Ftms eBook

Author : Michelle Margaret Sweeney
Publisher :
Page : pages
File Size : 40,99 MB
Release : 2009
Category :
ISBN :

GET BOOK

ABSTRACT: Noncovalent chemistry is the basis of many important biological interactions, including enzyme-ligand complex formation. As these interactions are typically weaker than covalent bonds, special analysis methods are needed for studying noncovalent complexes. Using gentle ionization methods like electrospray ionization (ESI), noncovalent complexes can be preserved and analyzed by mass spectrometry. Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS) provides superior mass accuracy, resolving power, and tandemin- time capabilities. Among the dissociation techniques available are in-source collision-induced dissociation and infrared multiple photon dissociation (IRMPD). Dynamic combinatorial chemistry uses a special type of library wherein reversible binding between library members and between library members and a target molecule expands the potential number of strong complex interactions. Here, several 2', 3'-cyclic monophosphate nucleotides were incubated with Ribonuclease A to generate enzyme-ligand complexes. Enzymatic activity may drive the library members to form RNA chains via phosphodiester bond generation. This dissertation shows the method development for screening a cyclic nucleotide-based dynamic combinatorial library for tight-binding ligands of Ribonuclease A using ESI-FTICR-MS.

Author : Edgardo Rivera Tirado
Publisher :
Page : 390 pages
File Size : 34,18 MB
Release : 2007
Category : Biomolecules
ISBN :

GET BOOK

"This dissertation shows the association and fragmentation reactions of synthetic polymers and biopolymers studied by Electrospray Ionization Quadrupole-Ion-Trap (ESI-QIT-MS), Matrix-Assisted Laser Desorption/Ionization Time-of-Flight (MALDI-ToF) and Electrospray Ionization Fourier Transform Ion Cyclotron Resonance (ESI-FTICR). The fragmentation reactions of protonated oligoalanines (trialanine, tetraalanine and pentaalanine) and the fragments present in the ESI mass spectrum of polyalanine have been studied by collisionally activated dissociation (CAD) mass spectrometry (MS2 and MS3 experiments). The MSn experiments provided strong evidence that the m/z 71n + 1 ion series in the ESI mass spectrum of polyalanine is a bn series. These ions are formed via the bn-ym pathway of amide bond cleavage, which results in the formation of a proton-bound complex of an oxazolone and a peptide/amino acid. Branched polyethylenimines with lower average molecular weights (600, 1200 and 1800 Da) have been studied by ESI and MALDI mass spectrometry. In both ESI and MALDI mass spectra, the main distribution arises from protonated PEI oligomers with NH2 end groups, [PEI + H], which are observed at m/z 43n + 18. A trace of sodium contamination in the PEI samples results in the presence of a series that appears at m/z 43n + 40 [PEI + Na]. CAD (MS/MS) of protonated PEI oligomers is shown to yield three fragment ion series bn, cn, and Kn. The association between synthetic polymers (polyalanine, poly(2-vinylpyridine), poly(ethylenimine)) and biomolecules (Arg, betaine, Ala-Arg, Gly-Arg, Leu-Arg, Arg-Val, Gly-Gly-Tyr-Arg, YGGFLK, 2'-CMP, 3'-CMP, 5'-CMP, dCMP, 2'-AMP, 3'-AMP, 5;-AMP) have been studied by ESI-FRMS and Sustained Off Resonance Irradiation-Collision Activated Dissociation (SORI-CAD) mass spectrometry. ESI-FTMS mass and tandem mass spectra confirm the formation of association (non-covalent) complexes between the polymers and biomolecules. Also, the MS/MS data show that the proton affinity of the complex-forming host oligomers is greater than those of the guests. Only Leu-Arg and Arg-Val guests were found to promote cleavages in the polyalanine. In a separate study, diazeniumdiolates (NONOates) have been analyzed by ESI-MS; the samples used are commercially available and include Diethylamine NONOate, DETA NONOate, Spermine NONOate, MAHMA NONOate, PROLI NONOate, Dipropylenetriamine NONOate, PAPA NONOate, and Sulpho NONOate. NONOates compounds have been found to ionize upon ESI by protonation, deprotonation and sodiation. The MSn experiments provided strong evidence that such ions release NO, HNO, N2O, NO2, N2O3, N4O3 and N4O4 when collisionally activated. Representative PIBSA (polyisobutylene succinic anhydride) samples have been studied by different MS techniques. Negative ion ESI-FTMS produces the best results. Differences between 'mono-succan' and di-succan' content can readily be observed. The source of the PIBSA (PIBSA-I and PIBSA-II processes) can be easily distinguished. The formation of methyl esters and amide derivatives can provide complementary data."--Abstract.