[PDF] Emboss Users Guide eBook

Author : Peter M. Rice
Publisher : Cambridge University Press
Page : 405 pages
File Size : 13,39 MB
Release :
Category :
ISBN : 052184519X

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The European Molecular Biology Open Software Suite (EMBOSS) is a well established, high quality package of open source software tools for molecular biology. It includes over 200 applications for molecular sequence analysis and general bioinformatics including sequence alignment, rapid database searching and sequence retrieval, motif identification and pattern analysis and much more. The EMBOSS User's Guide is the official and definitive guide to the package, containing comprehensive information and practical instructions from the people who developed it: • No prior experience with EMBOSS necessary • Set up and maintenance - get up and running quickly • Hands-on tutorial - learn EMBOSS the easy way, by working through practical examples • Data types and file formats - learn about the biological data that can be manipulated and analysed • In-depth explanation of the EMBOSS command line - learn advanced 'power user' features • Practical guides to popular EMBOSS GUIs (wEMBOSS and Jemboss)

Author : Peter M. Rice
Publisher : Cambridge University Press
Page : 394 pages
File Size : 45,58 MB
Release : 2011-06-16
Category : Science
ISBN : 9780521607254

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The European Molecular Biology Open Source Software Suite (EMBOSS) is the premier Open Source package of tools for molecular biology analysis and bioinformatics. Practical Bioinformatics with EMBOSS is the official and definitive guide to the package. It includes comprehensive information and practical instructions, including an in-depth tutorial and guidelines on common ways to use the package. It is written specifically for biologists, bioinformaticians and other end-users, and no prior experience with EMBOSS is assumed.

Author : Jon C. Ison
Publisher : Cambridge University Press
Page : 653 pages
File Size : 31,1 MB
Release : 2011-06-16
Category : Science
ISBN : 1139500279

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The European Molecular Biology Open Software Suite (EMBOSS) is a high quality, well documented package of open source software tools for molecular biology. EMBOSS includes extensive and extensible C programming libraries, providing a powerful and robust toolkit for developing new bioinformatics tools from scratch. The EMBOSS Developer's Guide is the official and definitive guide to developing software under EMBOSS. It includes comprehensive reference information and guidelines, including step-by-step instructions and real-world code examples: • Learn how to write fully-featured tools guided by the people who developed EMBOSS • Step-by-step guide to writing EMBOSS applications, illustrated with functional, deployed code • ACD file development - learn how to customise existing tools without coding, or design and write entirely new application interfaces • EMBOSS API programming guidelines - quickly master application development • Wrapping and porting applications under EMBOSS - learn how to incorporate third-party tools

Author : Alan J. Bleasby
Publisher : Cambridge University Press
Page : 175 pages
File Size : 48,40 MB
Release : 2011-06-16
Category : Science
ISBN : 1139497928

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The European Molecular Biology Open Software Suite (EMBOSS) is a high quality package of open source software tools for molecular biology. It includes over 200 applications integrated with a range of popular third party software packages under a consistent and powerful command line interface. The tools are available from a wide range of graphical interfaces, including easy to use web interfaces and powerful workflow software. The EMBOSS Administrator's Guide is the official, definitive and comprehensive guide to EMBOSS installation and maintenance: • Find all the information needed to configure, install and maintain EMBOSS, including recent additions for version 6.2 • Step-by-step instructions with real-world examples - saves readers time and helps them avoid the pitfalls on all the common platforms • In-depth reference to database configuration - learn how to set up and use databases under EMBOSS • Includes EMBOSS Frequently Asked Questions (FAQ) with answers - quickly find solutions to common problems

Author : Serdar Hakan DÜZGÖREN
Publisher : Serdar Hakan DÜZGÖREN
Page : 1789 pages
File Size : 39,84 MB
Release :
Category : Computers
ISBN :

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Gett􀶈ng started w􀶈th Fus􀶈on 360 Learn how Autodesk® Fusion 360® can help you bring your designs to life. What is Fusion 360? Fusion 360 is a cloud-based CAD/CAM/CAE tool for collaborative product development. Fusion 360 combines fast and easy organic modeling with precise solid modeling, to help you create manufacturable designs. Watch this short video to learn about what you can achieve with Fusion 360. Where your Fusion 360 data is stored All Fusion 360 design data is stored in the cloud. You can securely access your Fusion 360 data from anywhere. You can also use group projects to control who else can access your design data and collaborate with you. Tip: If you do not have internet access, you can still use Fusion 360 in offline mode. Learn how to work in offline mode. Learn more about design data management in Fusion 360. Design strategies Where Fusion 360 fits in the design process Fusion 360 connects your entire product development process in a single cloud-based platform for Mac and PC. Explore and refine the form of your design with the sculpting, modeling, and generative design tools. Since your Fusion 360 designs are stored and shared with your team in the cloud, you can iterate on your design ideas in real time, which increases team productivity. You can optimize and validate your design with assemblies, joint and motion studies, and simulations. Then communicate your design through photorealistic renderings and animations.

Author : Jon C. Ison
Publisher : Cambridge University Press
Page : 652 pages
File Size : 42,38 MB
Release : 2011-06-16
Category : Science
ISBN : 9780521607247

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The European Molecular Biology Open Software Suite (EMBOSS) is a high quality, well documented package of open source software tools for molecular biology. EMBOSS includes extensive and extensible C programming libraries, providing a powerful and robust toolkit for developing new bioinformatics tools from scratch. The EMBOSS Developer's Manual is the official and definitive guide to developing software under EMBOSS. It includes comprehensive reference information and guidelines, including step-by-step instructions and real-world code examples: • Learn how to write fully-featured tools guided by the people who developed EMBOSS • Step-by-step guide to writing EMBOSS applications, illustrated with functional, deployed code • ACD file development - learn how to customise existing tools without coding, or design and write entirely new application interfaces • EMBOSS API programming guidelines - quickly master application development • Wrapping and porting applications under EMBOSS - learn how to incorporate third-party tools

Author : Scott Markel
Publisher : "O'Reilly Media, Inc."
Page : 308 pages
File Size : 48,5 MB
Release : 2003-01-27
Category : Computers
ISBN : 9780596004941

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This work pulls together all of the vital information about the most commonly used databases, analytical tools, and tables used in sequence analysis.

Author : Paul Dear
Publisher : Scion Publishing Ltd
Page : 329 pages
File Size : 30,81 MB
Release : 2007-09-24
Category : Science
ISBN : 1907904379

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INTRODUCTION (Paul H. Dear) 1. Database resources for wet-bench scientists (Neil Hall and Lynn Schriml) 2. Navigating sequenced genomes (Melody Clark and Thomas Schlitt) 3. Sequence similarity searches (Jaap Heringa and Walter Pirovano) 4. Gene prediction (Marie-Adele Rajandream) 5. Prediction of non coding transcripts (Alex Bateman and Sam Griffiths-Jones) 6. Finding regulatory elements in DNA sequence (Debraj GuhaThakurta and Gary Stormo) 7. Expressed sequence tags (Arthur Gruber) 8. Protein structure, classification and prediction (Arthur Lesk) 9. Gene ontology (Vineet Sangar) 10. Prediction of protein function (Rodrigo Lopez) 11. Multiple sequence alignment (Burkhard Morgenstern) 12. Inferring phylogenetic relationships from sequence data (Peter Foster) Appendix Index

Author : Jung Soh
Publisher : CRC Press
Page : 273 pages
File Size : 22,23 MB
Release : 2016-04-19
Category : Computers
ISBN : 1040053521

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The success of individualized medicine, advanced crops, and new and sustainable energy sources requires thoroughly annotated genomic information and the integration of this information into a coherent model. A thorough overview of this field, Genome Annotation explores automated genome analysis and annotation from its origins to the challenges of next-generation sequencing data analysis. The book initially takes you through the last 16 years since the sequencing of the first complete microbial genome. It explains how current analysis strategies were developed, including sequencing strategies, statistical models, and early annotation systems. The authors then present visualization techniques for displaying integrated results as well as state-of-the-art annotation tools, including MAGPIE, Ensembl, Bluejay, and Galaxy. They also discuss the pipelines for the analysis and annotation of complex, next-generation DNA sequencing data. Each chapter includes references and pointers to relevant tools. As very few existing genome annotation pipelines are capable of dealing with the staggering amount of DNA sequence information, new strategies must be developed to accommodate the needs of today’s genome researchers. Covering this topic in detail, Genome Annotation provides you with the foundation and tools to tackle this challenging and evolving area. Suitable for both students new to the field and professionals who deal with genomic information in their work, the book offers two genome annotation systems on an accompanying downloadable resources.

Author :
Publisher :
Page : 1828 pages
File Size : 35,43 MB
Release : 2002-12
Category : Medicine
ISBN :

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Vols. for 1963- include as pt. 2 of the Jan. issue: Medical subject headings.